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Table 1 List of primers and probes used in this study

From: Epstein-Barr virus associated gastric carcinoma: a report from Iran in the last four decades

Genotype

Sequence

Type by probe or size after RE1 digestion

Reference

EBNA-3C

   

   Primers

   

Sense

5'-AGAAGGGGAGCGTGTGTTGT-3'

  

Antisense

5'-GGCTCGTTTTTGACGTCGGC-3

 

Sample et al. (53)

   Probes

   

Type 1

5'-GAAGATTCATCGTCAGTGTC-3'

153 bp2

 

Type 2

5'-CCGTGATTTCTACCGGGAGT-3'

246 bp

 

BamHI-F

   

   Primers

   

Sense

5'-TCCCACCTGTTACCACATTC-3'

Prototype F: 198 bp

Lung et al. (54)

Antisense

5'-GGCAATGGGACGTCTTGTAA-3'

Variant "f": 127 + 71 bp

 

   Probe

5'-AAGGCTACCGTGCTAATTACCTCC-3'

 

Hudson et al. (55)

BamHI-W1/I1

   

   Primers

   

Sense

5'-ACCTGCTACTCTTCGGAAAC-3'

Type I: 205 bp

Lung et al. (54)

Antisense

5'-TCTGTCACAACCTCACTGTC-3'

Type "i": 130+75 bp

 

XhoI site in LMP1

   

   Primers

   

Sense

5'-AACAGTAGCGCCAAGAGGAG-3'

XhoI+:113 bp

Sandvej et al. (56)

Antisense

5'-ATGGAACACGACCTTGAGAGG-3'

XhoI-: 67+46 bp

 
  1. 1Restriction enzyme; 2Base pairs