From: Epstein-Barr virus associated gastric carcinoma: a report from Iran in the last four decades
Genotype | Sequence | Type by probe or size after RE1 digestion | Reference |
---|---|---|---|
EBNA-3C | Â | Â | Â |
   Primers |  |  |  |
Sense | 5'-AGAAGGGGAGCGTGTGTTGT-3' | Â | Â |
Antisense | 5'-GGCTCGTTTTTGACGTCGGC-3 | Â | Sample et al. (53) |
   Probes |  |  |  |
Type 1 | 5'-GAAGATTCATCGTCAGTGTC-3' | 153 bp2 | Â |
Type 2 | 5'-CCGTGATTTCTACCGGGAGT-3' | 246 bp | Â |
BamHI-F | Â | Â | Â |
   Primers |  |  |  |
Sense | 5'-TCCCACCTGTTACCACATTC-3' | Prototype F: 198 bp | Lung et al. (54) |
Antisense | 5'-GGCAATGGGACGTCTTGTAA-3' | Variant "f": 127 + 71 bp | Â |
   Probe | 5'-AAGGCTACCGTGCTAATTACCTCC-3' |  | Hudson et al. (55) |
BamHI-W1/I1 | Â | Â | Â |
   Primers |  |  |  |
Sense | 5'-ACCTGCTACTCTTCGGAAAC-3' | Type I: 205 bp | Lung et al. (54) |
Antisense | 5'-TCTGTCACAACCTCACTGTC-3' | Type "i": 130+75 bp | Â |
XhoI site in LMP1 | Â | Â | Â |
   Primers |  |  |  |
Sense | 5'-AACAGTAGCGCCAAGAGGAG-3' | XhoI+:113 bp | Sandvej et al. (56) |
Antisense | 5'-ATGGAACACGACCTTGAGAGG-3' | XhoI-: 67+46 bp | Â |