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Table 1 List of PCR primers used for EBV subtyping and detection of LMP1 gene deletion

From: Aberrant antigenic expression in extranodal NK/T-cell lymphoma: a multi-parameter study from Thailand

Type of Primer

DNA sequence

Product size

EBNA2

EBV type A

2A-5'

5'-AACTTCAACCCACACCATCA-3'

116 bp

 

EBV type B

2A-3'

5'-TTCTGGACTATCTGGATCAT-3'

120 bp

EBV LMP-1

wild-type

1-A

5'-CGACTCTGCTGGAAATGATGGAGGC-3'

210 bp

 

deletion-type

1-B

5'-TGAACTGGGCCGTGGGGGTCGTCAT-3'

180 bp

β-actin (semi-nested PCR)

1st forward

SFW

5'-CAAGAGATGGCCACGGCTGCT-3'

 
 

2nd forward

S4FW

5'-GAGGCACTCTTCCAGCCTTCC-3'

148 bp

 

reverse

A5RV

5'-TCGTGGATGCCACAGGACTCC-3'

 
  1. EBNA2, Epstein-Barr virus nuclear antigen 2 gene; LMP1, latent membrane protein 1 gene