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Table 2 Differential SNPs and major pathways between tumor tissues and normal tissues in our patient

From: Exome sequencing analysis of gastric primary myeloid sarcoma with monocytic differentiation with altered immunophenotype after chemotherapy: case report

Type

Pathway

Gene name

P-value

Cancer pathways

Pathways in cancer

AR,EGLN1,JAG2,NOTCH4,WNT9B

1.95 × 10−5

Breast cancer

WNT9B,NOTCH4,JAG2

0.001

Notch signaling pathway

JAG2,NOTCH4

0.001

Signaling pathways regulating pluripotency of stem cells

WNT9B,LIFR

0.004

Hippo signaling pathway

WNT9B,BMP6

0.004

Wnt signaling pathway

NFATC4,WNT9B

0.005

Jak-STAT signaling pathway

LIFR,CRLF2

0.005

MAPK signaling pathway

RPS6KA4,MAPK8IP3

0.015

Basal cell carcinoma

WNT9B

0.040

Renal cell carcinoma

EGLN1

0.044

Metabolic pathways

Metabolic pathways

PDE10A,PDE8A,ATP6V0A1,DEGS2,B3GNT4,FPGS

0.001

Purine metabolism

PDE8A,PDE10A

0.003

Cushing syndrome

PDE8A,WNT9B

0.004

Folate biosynthesis

FPGS

0.017

Glycosphingolipid biosynthesis: lacto and neolacto series

B3GNT4

0.018

Sphingolipid metabolism

DEGS2

0.030

Ovarian steroidogenesis

BMP6

0.031

Cortisol synthesis and secretion

PDE8A

0.041

Others

Cytokine-cytokine receptor interaction

BMP6,LIFR,CRLF2

0.001

Human papillomavirus infection

WNT9B,ATP6V0A1,NOTCH4

0.001

RNA degradation

C1D,MPHOSPH6

0.001

Morphine addiction

PDE8A,PDE10A

0.002

Endocrine resistance

JAG2,NOTCH4

0.002

Collecting duct acid secretion

ATP6V0A1

0.018

Circadian rhythm

B3GNT4

0.020

Antifolate resistance

FPGS

0.020

Vibrio cholerae infection

ATP6V0A1

0.032

Epithelial cell signaling in Helicobacter pylori infection

ATP6V0A1

0.044

Antigen processing and presentation

KLRC2

0.049

Synaptic vesicle cycle

ATP6V0A1

0.049