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Table 3 Tagging SNPs information that were examined

From: RTEL1 tagging SNPs and haplotypes were associated with glioma development

SNP No.

Gene

chr

Position

MA

MAF (CHB)

MAF

HWE P

P

OR (95%CI)

P adj.

Genotype rate

      

Case

Control

     

rs12022378

AP4B1

chr1

114448389

C

0.411

0.360

0.393

0.4943

0.0889

1.15(0.98-1.35)

0.889

99.34

rs12917

MGMT

chr10

131506283

T

0.31

0.105

0.082

0.2082

0.0497

0.76(0.58-1)

0.497

99.67

rs12645561

NEIL3

chr4

178260872

T

0.114

0.275

0.268

0.1388

0.6903

0.97(0.81-1.15)

6.903

99.34

rs7003908

PRKDC

chr8

48770702

C

0.283

0.236

0.209

0.1246

0.1074

0.86(0.71-1.03)

1.074

99.83

rs6010620

RTEL1

chr20

62309839

G

0.393

0.269

0.327

0.194

0.0016

1.32(1.11-1.56)

0.016

99.83

rs2297440

RTEL1

chr20

62312299

C

0.226

0.266

0.325

0.3127

0.001

1.33(1.12-1.58)

0.01

100

rs4809324

RTEL1

chr20

62318220

C

0.12

0.114

0.120

0.6994

0.6328

1.06(0.83-1.35)

6.328

99.67

rs2992

UBXN6

chr19

4443046

A

0.295

0.436

0.433

0.4229

0.8701

0.99(0.84-1.16)

8.701

99.67

rs3770502

XRCC5

chr2

217045059

A

0.208

0.148

0.160

0.7558

0.4221

1.09(0.88-1.36)

4.221

99.83

rs9288516

XRCC5

chr2

217053264

A

0.489

0.480

0.450

0.4774

0.1288

0.89(0.76-1.04)

1.288

99.67