From: RTEL1 tagging SNPs and haplotypes were associated with glioma development
SNP No. | Gene | chr | Position | MA | MAF (CHB) | MAF | HWE P | P | OR (95%CI) | P adj. | Genotype rate | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Case | Control | |||||||||||
rs12022378 | AP4B1 | chr1 | 114448389 | C | 0.411 | 0.360 | 0.393 | 0.4943 | 0.0889 | 1.15(0.98-1.35) | 0.889 | 99.34 |
rs12917 | MGMT | chr10 | 131506283 | T | 0.31 | 0.105 | 0.082 | 0.2082 | 0.0497 | 0.76(0.58-1) | 0.497 | 99.67 |
rs12645561 | NEIL3 | chr4 | 178260872 | T | 0.114 | 0.275 | 0.268 | 0.1388 | 0.6903 | 0.97(0.81-1.15) | 6.903 | 99.34 |
rs7003908 | PRKDC | chr8 | 48770702 | C | 0.283 | 0.236 | 0.209 | 0.1246 | 0.1074 | 0.86(0.71-1.03) | 1.074 | 99.83 |
rs6010620 | RTEL1 | chr20 | 62309839 | G | 0.393 | 0.269 | 0.327 | 0.194 | 0.0016 | 1.32(1.11-1.56) | 0.016 | 99.83 |
rs2297440 | RTEL1 | chr20 | 62312299 | C | 0.226 | 0.266 | 0.325 | 0.3127 | 0.001 | 1.33(1.12-1.58) | 0.01 | 100 |
rs4809324 | RTEL1 | chr20 | 62318220 | C | 0.12 | 0.114 | 0.120 | 0.6994 | 0.6328 | 1.06(0.83-1.35) | 6.328 | 99.67 |
rs2992 | UBXN6 | chr19 | 4443046 | A | 0.295 | 0.436 | 0.433 | 0.4229 | 0.8701 | 0.99(0.84-1.16) | 8.701 | 99.67 |
rs3770502 | XRCC5 | chr2 | 217045059 | A | 0.208 | 0.148 | 0.160 | 0.7558 | 0.4221 | 1.09(0.88-1.36) | 4.221 | 99.83 |
rs9288516 | XRCC5 | chr2 | 217053264 | A | 0.489 | 0.480 | 0.450 | 0.4774 | 0.1288 | 0.89(0.76-1.04) | 1.288 | 99.67 |