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Sensitivity of an immunoglobulin heavy chain gene polymerase chain reaction primer system for routine diagnosis of lymphomas
Diagnostic Pathology volume 2, Article number: S7 (2007)
Polymerase chain reaction (PCR) and length fragment analyses of the immunoglobulin heavy chain (IgH) gene are useful tools for clonality assessment in malignant B-cell-lymphomas and reactive lymphoid infiltrates. The present investigation analyzes the sensitivity of an IgH gene consensus primer multiplex PCR system for the detection of clonality for routine diagnosis in 109 lymphomas during a period of 3 years (2003–2005) at the Institut of Pathology Klinikum Darmstadt.
We used FR2A/JH/VLJH and FR3A/JH/VLJH primer sets for detecting clonal B cell populations. Primer sequences used for PCR: Variable region FR2A consensus primer: FR2A: TGG(AG)TCCG(AC)CAG(GC) C(CT)(CT)C(AGCT)GG. Joining region (JH) consensus primer: LJH: TGAGGA GACGGTGACC, VLJH: GTGCAGGT(AGCT) CCTTGGCCCCAG-FAM. 1. PCR: FR2A/LJH and FR3A/LJH. 2. PCR: FR2A/VLJH-FAM and FR3A/VLJH-FAM. Fluorescence fragment analyses of IgH gene rearrangement were performed with FAM-labeled PCR products by high-resolution capillary electrophoresis using the ABI-PRISM 310 Genetic Analyzer (Applied Biosystems, Weiterstadt, Germany) with a POP 6-filled capillary (Applied Biosystems) and analyzed by using the GeneScan software (Applied Biosystems). A fragment was considered to be clonal in the case of a peak-height ratio (PHR) >2. The PHR was calculated as the quotient of the highest peak divided by the mean height of the two peaks surrounding the largest peak.
See Table 1.
The present study showed a variable sensitivity of PCR of IgH gene region with FR2A/JH/VLJH and FR3A/JH/VLJH consensus primer sets for different lymphomas. Sensitivity of our consensus primer set mainly depends on the existence of IgH gene rearrangements or the status of the IgH gene in the special lymphoma types, especially the occurrence of somatic hypermutation in variable-region genes.
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Heyny-von Haußen, R., Braun, C. & Mall, G. Sensitivity of an immunoglobulin heavy chain gene polymerase chain reaction primer system for routine diagnosis of lymphomas. Diagn Pathol 2, S7 (2007). https://doi.org/10.1186/1746-1596-2-S1-S7
- Polymerase Chain Reaction
- Multiplex Polymerase Chain Reaction
- Immunoglobulin Heavy Chain
- Heavy Chain Gene
- Routine Diagnosis